GgaINT1031061 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:14097162-14098036:+
Coord C1 exon
chr2:14097162-14097248
Coord A exon
chr2:14097249-14097894
Coord C2 exon
chr2:14097895-14098036
Length
646 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCACCATTGTTCTTTTCAGGGT
3' ss Score
8.93
Exon sequences
Seq C1 exon
AACCTTGAAACTAACCAACAGGAAAGTGGCTTTCGCCTGAATCTACATCATAGCCATTCTGTAAAGTGTTTAGAAGGGACACTGCAG
Seq A exon
GTGAGTGTGGCAGGCATTGCCTCTGCTCCCTCTTAACAACAAAAAAAAAGATGGGTCAGTCGATTAAGTAAATATTCAGAGCCTTAGGAATATGAATTGCAGAGATCTCCGGCCGTGTCGTTACCCTTTTGGCACTGGGAGACTTCAGAGCAGGGTATTTTCTTAGTTAACAACTAAAGCTAGCTTCTGAATACGTCCTCTGTACAGATGTGGAAGTGTCTAACGTTCAGAAGTGTGTGGTGTTTGCACTGAGGATGGACACGTCTTTAAAAACGTTCAGAAGTTACTGGCAATCTGAACATCTGAGGCACTGAACTGGGTTTGGAATTCCGTGAGAACAGTTTGACCTGTGAAACAACGTTGTTCCATAGGATTTGGAAAATAAGTTTCTTTGTGTTTTAAATAGGTGTGGGGACTTCCATCGCTGTTACTGTCATGGAGCTAAAATTGCATAGAGAAATCACAGTTCAGCTCTTACCTAGCTGTACCGAATGTCAACAGTTTAGTCTTGCGAGAATGACTGGGCTGGTTCTGGTTTACGTGGATGGATTTTTGTTTCACTAGTTTGTGTGTAGCTTTAAAATGAGGAGAGTACTGACTCCTGGAAGCCTCAATCACATGTGTGTGCCACCATTGTTCTTTTCAG
Seq C2 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTAACCAACAGGAAAGTGGCT
R:
CTGAGGCTTGAAGAATGCCAT
Band lengths:
222-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]