HsaINT0056882 @ hg38
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr10:32272026-32273281:-
Coord C1 exon
chr10:32273163-32273281
Coord A exon
chr10:32272168-32273162
Coord C2 exon
chr10:32272026-32272167
Length
995 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTTGTATTTTCTTTTTAGGGT
3' ss Score
11.65
Exon sequences
Seq C1 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAGCAACTGGCACTCATGCAGAAACAGCAGCTTGCACAAATTCAGCAACAGCAAGCAAATAGTAATTCCTCCACCAACACATCACAG
Seq A exon
GTGAGGGATTTGTCTGTCTTATGATTATCCCTCATTGTTTCCCACCAGAGTTCATCTCTAATTACCAACTGTTGTCATAGAACCTTGCATCTAACCAGCAGAAAAGTGGCTTTCGCCTGAATATACAGGGTTTAGAAAGAACACTACAGGTGAGTATGGAAGCTGTTGCCTCTGCTCCCTATTTTAAAAAGTAAAACTAAAGCACTTAGTTAAATGAGATGAAGATACTGTCTTCCCGTCTGACCTGTAGTCCATTAATGTACCTCTTGAATATATAACCCCACCCAGTTCATTCTCTTGGGCATGTTAATTATTATTAAGGCTTTTAACATTATGCAAAAATAACCTCTCCAACTGTTGAAAGAGATAACTTTTAAACCTAAAGCATGATAAACGTTTGCCAGTTAAACACATGTAGGGCATAAAGGCTGAGGTTTGAGTCCCTGCATCTTGCAGGAAAAATATATTTTTAAAAAGTTGAGGGGCCTATCAATTTCTAGGTTAAATTATGTGATATTTTGTTACTTCCATTTCTAAAGGGATAGTTATCTTATCCCAAAGGTGCCTTTCATTGTGTGTGTATACATATGTGTGTGTGTATAAGTTAGGTGAAGGAAGTTTACATATTCATTTATTCATTATATGGATTTGCAAATCACTGAAATGTTTACTAGCATATTTCTTGTCCAACATTTTGTGTTGGAGGTTTGCTGTTTCCACATTATAGAAGGCTTATTTTGGTAATTGACTTATACATATTATATATTGTCACATATGAAGCAAAATTTATAACTTAGATTACTTTTCACTTATCAAATATATGACTATCAAAAGAGATATAATTACTGTTGCATCTCAAGGTACCAAAATAGAAAGATTTCAGTGGTTTGCCATTTTTACTTATATTCAAACTGATTTTGGTATGCATGTGTAGTTTTGATATTGATTTGATACTAAGTGATACTGATTAGATTTCTTTTGTATTTTCTTTTTAG
Seq C2 exon
GGTTTTGTTTCTAAGACTTTGGATTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGGTGACATCAGAACAACTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGAATCGGGGTGAATGGCGTCCTTCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616:ENST00000375110:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(15.3=97.5)
A:
NA
C2:
PF067527=E_Pc_C=FE(18.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCGAACAATACCAGCAA
R:
GAGGCTGGAAGGACGCCATT
Band lengths:
254-1249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development