BtaINT0056825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33514805-33515090:+
Coord C1 exon
chr13:33514805-33514923
Coord A exon
chr13:33514924-33515003
Coord C2 exon
chr13:33515004-33515090
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATTACCAACTGTTGTCATAGAAC
3' ss Score
4.94
Exon sequences
Seq C1 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAGCAGCTGGCACTCATGCAGAAACAGCAGCTTGCACAAATTCAGCAACAGCAAGCAACTAGTAATTCCTCCACCACCGTGCCACAG
Seq A exon
GTGAGGGATTTGTCTGTCTTATGATTATCCCTCATTGTTTCCCACCAGAGTTCATCTCTAATTACCAACTGTTGTCATAG
Seq C2 exon
AACCTTGCATCTAACCAGCAGAAAAGTGGCTTTCGCCTGAATCCACATCATAGCCACTCTATACAGGGTTTAGAAAGAACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.862
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(14.9=97.5)
A:
NA
C2:
PF067527=E_Pc_C=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGAACAATACCAGCAACA
R:
GGCTATGATGTGGATTCAGGCG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development