GgaINT0101662 @ galGal4
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr2:14096962-14097248:+
Coord C1 exon
chr2:14096962-14097080
Coord A exon
chr2:14097081-14097161
Coord C2 exon
chr2:14097162-14097248
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATTGTCAACTGTTGCCATAGAAC
3' ss Score
5.53
Exon sequences
Seq C1 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAACAACTGGCACTAATGCAGAAACAGCAGCTTGCACAAATTCATCAACAGCAAGCAAATAGTAATTCCTCTGCCAACACATCACAG
Seq A exon
GTGAGGGATTTGTCTGTGCTATGATTTATCCCTCATTGTTTCCCACCAGGGTTCATCTCTAATTGTCAACTGTTGCCATAG
Seq C2 exon
AACCTTGAAACTAACCAACAGGAAAGTGGCTTTCGCCTGAATCTACATCATAGCCATTCTGTAAAGTGTTTAGAAGGGACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.448
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(14.9=97.5)
A:
NA
C2:
PF067527=E_Pc_C=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGAACAATACCAGCAACA
R:
TGGCTATGATGTAGATTCAGGCG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]