DreINT0063540 @ danRer10
Intron Retention
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40971974-40972297:+
Coord C1 exon
chr12:40971974-40972080
Coord A exon
chr12:40972081-40972158
Coord C2 exon
chr12:40972159-40972297
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCTCCTGCTGTGTCCTCAGTCT
3' ss Score
8.94
Exon sequences
Seq C1 exon
CGTTCACAGCTGAGCAGTATCAGCAGCATCAAGAACAGCTGGCTCTTATGCAGAAACAGCAGCTGGAGCAGATTCAACATCAGGCCAACAACAGCGCCTCCAGTCAG
Seq A exon
GTGTGTATCAGACACAGGCAGCACTCACGTCTGGAGCTGTGCTCTGCTTTATATAACGCTCTCCTGCTGTGTCCTCAG
Seq C2 exon
TCTCTCGTGTCTAAGACGCTGGACTCTGTCAGCGCTCAGTTTGCGGCCTCTGCACTCATGACCTCTGACCAGCTACTGACCCTGAAGGTCAAAGAGGACGGCGCAGGAGGTGGAGTTAACGGAGTCATTCAGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579:ENSDART00000158811:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(16.1=97.2)
A:
NA
C2:
PF067527=E_Pc_C=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAGAACAGCTGGCTCT
R:
TCAGGGTCAGTAGCTGGTCAG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]