HsaINT0056883 @ hg19
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32560954-32562010:-
Coord C1 exon
chr10:32561942-32562010
Coord A exon
chr10:32561096-32561941
Coord C2 exon
chr10:32560954-32561095
Length
846 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTTTGTATTTTCTTTTTAGGGT
3' ss Score
11.65
Exon sequences
Seq C1 exon
AACCTTGCATCTAACCAGCAGAAAAGTGGCTTTCGCCTGAATATACAGGGTTTAGAAAGAACACTACAG
Seq A exon
GTGAGTATGGAAGCTGTTGCCTCTGCTCCCTATTTTAAAAAGTAAAACTAAAGCACTTAGTTAAATGAGATGAAGATACTGTCTTCCCGTCTGACCTGTAGTCCATTAATGTACCTCTTGAATATATAACCCCACCCAGTTCATTCTCTTGGGCATGTTAATTATTATTAAGGCTTTTAACATTATGCAAAAATAACCTCTCCAACTGTTGAAAGAGATAACTTTTAAACCTAAAGCATGATAAACGTTTGCCAGTTAAACACATGTAGGGCATAAAGGCTGAGGTTTGAGTCCCTGCATCTTGCAGGAAAAATATATTTTTAAAAAGTTGAGGGGCCTATCAATTTCTAGGTTAAATTATGTGATATTTTGTTACTTCCATTTCTAAAGGGATAGTTATCTTATCCCAAAGGTGCCTTTCATTGTGTGTGTATACATATGTGTGTGTGTATAAGTTAGGTGAAGGAAGTTTACATATTCATTTATTCATTATATGGATTTGCAAATCACTGAAATGTTTACTAGCATATTTCTTGTCCAACATTTTGTGTTGGAGGTTTGCTGTTTCCACATTATAGAAGGCTTATTTTGGTAATTGACTTATACATATTATATATTGTCACATATGAAGCAAAATTTATAACTTAGATTACTTTTCACTTATCAAATATATGACTATCAAAAGAGATATAATTACTGTTGCATCTCAAGGTACCAAAATAGAAAGATTTCAGTGGTTTGCCATTTTTACTTATATTCAAACTGATTTTGGTATGCATGTGTAGTTTTGATATTGATTTGATACTAAGTGATACTGATTAGATTTCTTTTGTATTTTCTTTTTAG
Seq C2 exon
GGTTTTGTTTCTAAGACTTTGGATTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGGTGACATCAGAACAACTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGAATCGGGGTGAATGGCGTCCTTCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-EPC1:NM_025209:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(8.6=100)
A:
NA
C2:
PF067527=E_Pc_C=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTGCATCTAACCAGCAGA
R:
GCTGGAAGGACGCCATTCAC
Band lengths:
206-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)