MmuINT0058032 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6440049-6441243:-
Coord C1 exon
chr18:6441122-6441243
Coord A exon
chr18:6440191-6441121
Coord C2 exon
chr18:6440049-6440190
Length
931 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTTGTGTTTTCCTATCAGGGT
3' ss Score
10.92
Exon sequences
Seq C1 exon
CATTCACAGCCGAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCAGCAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAG
Seq A exon
GTGAGGGCCTTGTGTCTTAGGATTATCCTCGTTGTTTCCCACCAGAGTTCATCTCTAATTACCAAGTGTTGTCCTAGAACCTTGCATCTAACCAGCAGAAAAGTGGCTCTGGCCTGAATGTACAGGGTTTAGAAAGAACATTCCAGGTGAGTCTGGGAGCTGTTTGCTCTGCTGCCTGTTACACAGAGTAGCCTGAGACCATGGTTCTCTTAGTTGTAAAGTTGCTTCTTTCTGACTCGTGGTCTGTGTGTAACGTACTGTCCCCAACGTAAAGCCCCAGCAGCAGATGTTCCGGTTCCAGAACTAAGCCCAAACAACCTGTTCTGCTCTTGGAAAAGTATTTGCTGTATAGATAGAGTTGGGGCTTGAAAGGCTGAGAATTGAGTCTTCTAAGCATCTTAAAGGAAATTTCATTTTTGGAGATTAAAGAGGTCTTCTCATTTTTTAATTACGATGTCAGATCTTTTTTTAATTAAGAGATGGTTGTCTTACTATTGAAAGATGCCTTTGAGTGTACAGTGGGTGGATATTAGCACTGAGGGTGTTTACAGAGAGGAGCCATTTAGAGATTAAATGGAAGAAGTTTACATATTTGCCTTAATGGGTTCGTCCAGCACTGCACTACCTGAGAAATGTGTTTTAACCTTTCAAGTGGAACTTTTTGCTGTTGTTGCATTCTGTACTAATAGGCTTATTTTGGTAATTGCTTTGTATATATTTTGTATTCCCATAGGAAGATCAAAATGTATAAACCCTTAAGTTAGCTAACTTTTCAACCTTCAGACTTACGGCTATGAAAATAGAATAGATCTCATTGGTTTGCTGCTTTTAGATCTGTGAAGCTGACTGTGGTGACCTGTGTAGTGAGGCCGACTGACTGTGGTGGCCTGTGTTGCTCTGACTCATGCTGACCTTTGTGTTTTCCTATCAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(17.2=97.6)
A:
NA
C2:
PF067527=E_Pc_C=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCACAGCCGAACAGTACCA
R:
GAGGCAGGAAGGACGCCATT
Band lengths:
262-1193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types