GgaEX1022981 @ galGal3
Exon Skipping
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15639019-15640695:-
Coord C1 exon
chr14:15640539-15640695
Coord A exon
chr14:15640139-15640239
Coord C2 exon
chr14:15639019-15639100
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCCTCCCTGTGCAGACT
3' ss Score
10.35
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
AAACAAGTTGATGAAGGAGTCCCTCTGCACATCTGCTTGTCACAGTTCTTGAAGTGGCTTCAGGAGATACAAAAGGAGAAGAAAATTCTGTTCAGCTCAGATATCCCAAGGAATGCCATTCCAGAGGCAAAGCTGTGTACTTTTGTTACCTGGACAG
Seq A exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
Seq C2 exon
GCCTTCTATAATAGAAAACCTAAAGGGCTGAGTGGTGCTTTGCAGTACGTGGGGCTGGCTTTTGTAGGAAGGGAACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(27.7=100)
A:
PF0092919=RNase_T=FE(17.6=100)
C2:
PF0092919=RNase_T=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAAGTTGATGAAGGAGTCCCTC
R:
TGTTCCCTTCCTACAAAAGCCA
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]