HsaEX0023067 @ hg19
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20811279-20812681:-
Coord C1 exon
chr16:20812525-20812681
Coord A exon
chr16:20811624-20811724
Coord C2 exon
chr16:20811279-20811360
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGTACCTAATGCAGACT
3' ss Score
5.5
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTTCTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCTGCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAG
Seq A exon
ACTGGGACTTGGGGGTTTGCCTGGAGTATGAGTGTAAAAGAAAGCAGCTGTTAAAACCTGTGTTTTTAAATTCTTGGATTGATCTCAGAGCAACTTACAAG
Seq C2 exon
CTTTTCTATAGGAGAAAACCAAAAGGACTAAGTGGTGCCTTGCAGGAAGTAGGAATAGAATTCTCAGGACGAGAACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(39.3=79.2)
A:
PF0092919=RNase_T=FE(17.5=100)
C2:
PF0092919=RNase_T=FE(14.3=100)


Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGTTGATGAAGGAGTCCC
R:
TCGTCCTGAGAATTCTATTCCTACT
Band lengths:
229-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)