MmuEX6013620 @ mm9
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126930918-126933904:-
Coord C1 exon
chr7:126933748-126933904
Coord A exon
chr7:126931248-126931348
Coord C2 exon
chr7:126930918-126930999
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTAATATCCATAATGCAGACT
3' ss Score
4.25
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTTCAAGTCGATGAAGGAGTCCCCCTGAAGATTTGCTTGTCCCAGTTCTGTAAATGGATCCATAAGCTGCAGCAGCAGCAGACGATCAGCTTTGCTGCTGGGGATTCAGAGCCTTCTACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAG
Seq A exon
ACTGGGACTTGGGCGTTTGCCTAGAGTATGAGTGTAGAAGAAAGCAGCTGTTAAAACCTGTGTTCTTAAACTCTTGGATTGATCTCAGAGCAACTTACAGG
Seq C2 exon
CTTTTTTATAAAAGAAAACCCAAAGGACTGAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-'5-8,'5-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(42.5=90.6)
A:
PF0092919=RNase_T=FE(17.5=100)
C2:
PF0092919=RNase_T=FE(14.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCGATGAAGGAGTCCCCC
R:
CAGAATGTTCTCGTCCTGAAAAT
Band lengths:
235-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: