GgaEX1023547 @ galGal3
Exon Skipping
Gene
ENSGALG00000008332 | F1NXV6_CHICK
Description
NA
Coordinates
chr5:25592017-25593165:-
Coord C1 exon
chr5:25593055-25593165
Coord A exon
chr5:25592645-25592771
Coord C2 exon
chr5:25592017-25592184
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGACTGCCTATTTTTTCAGACT
3' ss Score
6.25
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACAGCTCGCTCGAGGATGAGAATGAACAGGTGGAGGAAATAGCGGGACGTACCATCTTTCAAGAGTTCAAAACCTTCTTTGATGAAAAAACTTTTGGTGAAGGTGAAGCAG
Seq A exon
ACTGTGGAACTCGCCCTTTATTCGAAAAGAAACAGATAACAGACCAAAGTGAGAAGGAGCTGATGGACTCCTACATGGGAGGCAGAGTTGTACACGGGAACGATGCAGAAGTTGGAAGCGCCCCCTG
Seq C2 exon
GCAGGTGATGCTCTACAAAAAGAGTCCTCAAGAGCTGCTGTGTGGTGCCAGCCTCATCAGTAACAGCTGGATCCTGACTGCTGCTCATTGCCTTCTTTATCCACCCTGGGACAAGAACTTAACTACAAATGACATCTTGGTGCGGATTGGCAAGCATTTCAGGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093965=Thrombin_light=PU(40.8=52.6)
A:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
C2:
PF0008921=Trypsin=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTCGAGGATGAGAATG
R:
CCAATCCGCACCAAGATGTCA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]