RnoEX0033766 @ rn6
Exon Skipping
Gene
ENSRNOG00000016325 | F2
Description
coagulation factor II [Source:RGD Symbol;Acc:61996]
Coordinates
chr3:80535020-80536230:-
Coord C1 exon
chr3:80536117-80536230
Coord A exon
chr3:80535915-80536041
Coord C2 exon
chr3:80535020-80535187
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTCTTGCTCTGCAGACT
3' ss Score
11.05
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATGAAGCGGTGGGAGAGGAGAACCATGACGGGGACGAGTCCATCGCAGGACGCACCACCGACGCGGAGTTCCACACCTTCTTCGATGAGAGGACTTTCGGCCTTGGGGAGGCAG
Seq A exon
ACTGTGGCCTGCGGCCTTTGTTCGAGAAGAAGTCCTTGACAGACAAAACGGAAAAGGAGCTTCTTGATTCTTACATAGATGGGCGCATCGTGGAGGGCTGGGACGCTGAGAAGGGTATCGCCCCATG
Seq C2 exon
GCAGGTGATGCTTTTTCGGAAGAGTCCCCAAGAGCTGCTGTGTGGAGCCAGCCTTATCAGTGATCGATGGGTCCTCACTGCTGCCCACTGCATTCTGTACCCACCCTGGGACAAGAACTTCACTGAGAATGACCTCCTGGTGCGCATTGGCAAGCACTCCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016325-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF093965=Thrombin_light=PU(40.8=51.3)
A:
PF093965=Thrombin_light=PD(57.1=65.1),PF0008921=Trypsin=PU(5.2=30.2)
C2:
PF0008921=Trypsin=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGAGAGGAGAACCATGA
R:
CCAGGAGGTCATTCTCAGTGA
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]