GgaEX1024103 @ galGal4
Exon Skipping
Gene
ENSGALG00000009718 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr6:31650337-31658639:-
Coord C1 exon
chr6:31658588-31658639
Coord A exon
chr6:31657609-31657682
Coord C2 exon
chr6:31650337-31651064
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTTTTTTTTTCAGATG
3' ss Score
11.49
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
Exon sequences
Seq C1 exon
CACACTCCAAAGATGAGTCAAGGACCTACCCTCTTCTCTTGTGGCATTATGG
Seq A exon
ATGAAAGTCACAAGCTTCAAAGTCAAGAATGGGCAGGAACAGTCCGTTCCCTTTCTCCTGCCTGTCAAAAATGA
Seq C2 exon
AAAATGACAGATGGGGAGACCTCAGCAGGAAATGTCCACTGCAGATCGAGCAGCCGGGCACCAACATCTGGGACTGCCTGGCCGACAAGGGCGAGGAGGGCACGCTGTGGCCGCGGGAGGCCACCAGCACCTGCTCGGTGACCAACCTCATCAAAGAGCTCAGCCTCAGCGATCCTCACAGCAACCCATCGGCGCCGCCCAGCAAGCGCCAGTGCCGCTCGCTGTCTTTTTCGGATGAAATGTCCAGCTGCAGGACATCATGGAGACCTTTGGGCTCCAAGGTCTGGACGCCGGTTGAGAAGAGGCGGTGTTACAGCGGGGGGAGCGTCCAGCGCTACTCCAACGGCTCGGCCACCATGCAGAGGAGCTCCAGCTTCAGCCTGCCGTCCCGCTCCCATCCTCTGGCCTCGTCCTGCGACCACCGCCCGGGCTGCCCGCCGAGGAGATCTGGGGCTGGAGGTGACGCCTGGAGCCCTGAGGGCGGCCGGGCGGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009718_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.083 C2=0.618
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(27.0=100)
A:
PF152421=FAM53=PD(34.9=88.0)
C2:
PF152421=FAM53=FE(85.6=100)
Main Inclusion Isoform:
ENSGALT00000015817fB7460
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCCTCTTCTCTTGTGGC
R:
GGTTGGTCACCGAGCAGG
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]