GgaEX0014396 @ galGal4
Exon Skipping
Gene
ENSGALG00000009718 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr6:31650337-31661235:-
Coord C1 exon
chr6:31661167-31661235
Coord A exon
chr6:31658588-31658639
Coord C2 exon
chr6:31650337-31651064
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTGGTTGTTTTCAGCAC
3' ss Score
9.2
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGTGATGATCTTAACCAAAACTCGGGAAAACAAAGGTGCCGACTCTGTAACATGCAGGACTGAGCTG
Seq A exon
CACACTCCAAAGATGAGTCAAGGACCTACCCTCTTCTCTTGTGGCATTATGG
Seq C2 exon
AAAATGACAGATGGGGAGACCTCAGCAGGAAATGTCCACTGCAGATCGAGCAGCCGGGCACCAACATCTGGGACTGCCTGGCCGACAAGGGCGAGGAGGGCACGCTGTGGCCGCGGGAGGCCACCAGCACCTGCTCGGTGACCAACCTCATCAAAGAGCTCAGCCTCAGCGATCCTCACAGCAACCCATCGGCGCCGCCCAGCAAGCGCCAGTGCCGCTCGCTGTCTTTTTCGGATGAAATGTCCAGCTGCAGGACATCATGGAGACCTTTGGGCTCCAAGGTCTGGACGCCGGTTGAGAAGAGGCGGTGTTACAGCGGGGGGAGCGTCCAGCGCTACTCCAACGGCTCGGCCACCATGCAGAGGAGCTCCAGCTTCAGCCTGCCGTCCCGCTCCCATCCTCTGGCCTCGTCCTGCGACCACCGCCCGGGCTGCCCGCCGAGGAGATCTGGGGCTGGAGGTGACGCCTGGAGCCCTGAGGGCGGCCGGGCGGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009718_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.204 C2=0.618
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(34.9=95.7)
A:
PF152421=FAM53=FE(27.0=100)
C2:
PF152421=FAM53=FE(85.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAACAAAGGTGCCGACT
R:
CTTGTCGGCCAGGCAGTC
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]