RnoEX0034616 @ rn6
Exon Skipping
Gene
ENSRNOG00000061348 | Fam53b
Description
family with sequence similarity 53, member B [Source:RGD Symbol;Acc:1310799]
Coordinates
chr1:204761727-204780713:-
Coord C1 exon
chr1:204780455-204780713
Coord A exon
chr1:204773090-204773141
Coord C2 exon
chr1:204761727-204762505
Length
52 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTGCTTGTTTTCAGCAC
3' ss Score
8.8
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTGTTGACTTCTTTTGGCCCTTCCCAGAGGGCCTTGTCACCAGTCTGAGCAACTGATGGGGAGCTGTTTCCGATGACATCACTCCCCAGGATGCTCAAGTATCACTGTTAATCAAGTCTGCCCACCTGAAGATGGCCTGTACCCAACCTGGGATGCAGCCCAGTGCCTGAGGTCCTTACCATGGTGATGATCCTAAGGAGAAGCCTCATCAACCAGGGAGCTGACTCTGTAGCACACAGGACCTTCATCCCTGAACTG
Seq A exon
CACACGCCAAAGATGAGTCAAGGACCTACCCTCCTCTCCTGCGGAATTATGG
Seq C2 exon
AAAATGACAGATGGCGAGACCTGGATAGAAAATGCCCTCTTCAGATTGACCAGCCAAGCGCCAGCATCTGGGAATGTCTGCCTGAAAAGTGTCAGGATGGCTCTCTGTGGCACCAGGAGGCGGTGACTGCCTGTGCAGTGACCAGTCTAATCAAAGACCTCAACATAAATGACCACAATGGGAACCCCTCAGCTCCTCCCAGTAAACGCCAGTGCCGGTCACTATCCTTCTCTGATGAGATGTCCAGTTGCCGGACGTCATGGCGGCCCTTGGGGTCCAAAGTCTGGACTCCCGTGGAGAAGAGACGATGCTACAGCGGAGGCAGTGTCCAGCGCTACTCCAATGGTGTCAGCCCCATGCAGCGGAGCTCTAGCTTCAGCCTCCCTGCCCGGGCTAATGGGCTCTCTTCACCTTGCCACCAGTCAAGCCTGCACCACCGCTTTGGGGGACAACCCTGCCGAGGAGCGCCAGGCTCCGCCCCTTGTGGGCGGGTGGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061348-'8-11,'8-8,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.133 C2=0.464
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(43.9=96.2)
A:
PF152421=FAM53=FE(29.8=100)
C2:
PF152421=FAM53=FE(85.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCTCATCAACCAGGGA
R:
GGCAGACATTCCCAGATGCTG
Band lengths:
142-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]