BtaEX0014004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012970 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr26:44620513-44644394:-
Coord C1 exon
chr26:44644140-44644394
Coord A exon
chr26:44635273-44635327
Coord C2 exon
chr26:44620513-44621291
Length
55 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTGGTTGTTTGCAGCAC
3' ss Score
9.02
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGCTGACCTCACTCCGCTGTTTCCTGGAGGAGCCCCACCCCGATGGGGAGCAGCCTCTGCTGACGTCATCGCCCGGGAGACATCCCAGGAGGTCGCCTCTGCACCCCCCCGTCTGCCCACCTGAAGATGGCTCGTGCCCACCCTGGGCTGGTGCCCAGTGCCTGAGGCCCTTACCATGGTGATGATCCTGAGTCAAAGCCTCGACAAGCAGGGAGCCGACCCCGTGGCCTGCAGGACCTTCAACCCTGAGCCG
Seq A exon
CACACGCCAAAGAAGATGAGTCAAGGACCGACACTTTTCTCTTGTGGAATCATGG
Seq C2 exon
AAAATGACAGATGGCGAGACCTGGACAGGAAGTGCCCCCTTCAGATCGACCAGCCGAGCGCCAGCATCTGGGAGTGCCTGCCGGACAAGTGCCAGGACAGCGCCCTGTGGCACCGGGAGGCGGCCACCACCTGCGCGGTCACCAACCTGATCAAAGACCTCAGCCTCAGTGACCACAACGGACACCCGTCCGCGCCCCCCAGCAAGCGCCAGTGCCGGTCGCTGTCCTTCTCGGACGAGATGGCCAGCTGCCGGACGTCGTGGAGGCCCTTGGGGTCCAAAGTCTGGACGCCGGTGGAGAAGAGGCGCTGCTACAGCGGGGGCAGCGTGCAGCGTTACTCCAACGGCTTCGGCACCATGCAGCGGAGCTCCAGCTTCAGCCTCCCGTCCCGCGCCAGCACGCTGTCCTCGCCCTACGACCCGGCGGGACTCCACCCGCGGCCCGGCGGCCCGCCCGGCCCGGGGGTGCTGGGCCCGGCCACCTGCGGACAGGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012970_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=0.526 C2=0.527
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(8.2=96.2)
A:
PF152421=FAM53=FE(5.9=100)
C2:
PF152421=FAM53=FE(85.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCTTACCATGGTGATGA
R:
GATCTGAAGGGGGCACTTCCT
Band lengths:
136-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development