DreEX0031877 @ danRer10
Exon Skipping
Gene
ENSDARG00000016156 | fam53b
Description
family with sequence similarity 53, member B [Source:ZFIN;Acc:ZDB-GENE-040426-2495]
Coordinates
chr12:46899135-46914860:+
Coord C1 exon
chr12:46899135-46899300
Coord A exon
chr12:46903628-46903682
Coord C2 exon
chr12:46914202-46914860
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTGTGTTTCTACAGCAG
3' ss Score
9.13
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGAAGGGGTTCGGTGTGATGTCGGATCGGCTATGAGCTTCTCTACAACTGTCCTGCACTGGAATGGACCGTGGCAAAGATGTGTGTTGCCATGGTAATTATTCACACTAAAACACTGGAAAAGAAGGCGGTTGACGATGTAACATCCGAAGCGTCTCTGCAGCCG
Seq A exon
CAGGAGCCGCTGACCATGAGCCAGGGGACAGCTCTGTTCTCCTGTGGAATCATGG
Seq C2 exon
ACTCTGGGCGCTGGGCAGATGTTGGGAGTGTGTGTGGCGTCCAGCAGCGGCCTGTGGGCTCCAGTCTGGAGAGCCTGTGGGACAGCATGCGTGAGGCGGGCGCCACTGGCGGCATCAGCGGGTTACTGCGGGATCTGAGTCTGAGCGAAGCGTCTCCTGCCAGTGCTGCGCCGCCCAGCAAACGCCAGTGCCGCTCGCTGTCCTGCTCGGATGAGCTGGGCTGCCGCTCATCCTGGCGTCCGCAGGGTTCGCGCGTCTGGACAACGGTGGAAAAGCGGCGCTGCCACAGTGGAGGGAGCGTCCAGAGAGGAGTCTTCAATCCATCAGGCTTTCCTGCAATGCAGCGCAGCTCCAGCTTCAGTCTGCCGGCGCACAGCAGTCATCTGGAGCCCTTCACTCACGGTTTCCCATTCCAGGCATTCTCCGAGTGTCCGCAGACGCCGCAGACGCTGTACCGTTCACATGAGCAGATCTGCCCGGCGGAGGCCAGCTCCCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016156_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.211 C2=0.381
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(12.2=82.8)
A:
PF152421=FAM53=FE(9.2=100)
C2:
PF152421=FAM53=PD(77.6=69.1),PF152421=FAM53=WD(100=37.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGCAAAGATGTGTGTT
R:
ACACACACTCCCAACATCTGC
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]