GgaEX0014396 @ galGal3
Exon Skipping
Gene
ENSGALG00000009718 | FAM53B
Description
NA
Coordinates
chr6:33827554-33841745:-
Coord C1 exon
chr6:33841677-33841745
Coord A exon
chr6:33839098-33839149
Coord C2 exon
chr6:33827554-33828299
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTGGTTGTTTTCAGCAC
3' ss Score
9.2
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGTGATGATCTTAACCAAAACTCGGGAAAACAAAGGTGCCGACTCTGTAACATGCAGGACTGAGCTG
Seq A exon
CACACTCCAAAGATGAGTCAAGGACCTACCCTCTTCTCTTGTGGCATTATGG
Seq C2 exon
AAAATGACAGATGGGGAGACCTCAGCAGGAAATGTCCACTGCAGATCGAGCAGCCGGGCACCAACATCTGGGACTGCCTGGCCGACAAGGGCGAGGAGGGCACGCTGTGGCCGCGGGAGGCCACCAGCACCTGCTCGGTGACCAACCTCATCAAAGAGCTCAGCCTCAGCGATCCTCACAGCAACCCATCGGCGCCGCCCAGCAAGCGCCAGTGCCGCTCGCTGTCTTTTTCGGATGAAATGTCCAGCTGCAGGACATCATGGAGACCTTTGGGCTCCAAGGTCTGGACGCCGGTTGAGAAGAGGCGGTGTTACAGCGGGGGGAGCGTCCAGCGCTACTCCAACGGCTCGGCCACCATGCAGAGGAGCTCCAGCTTCAGCCTGCCGTCCCGCTCCCATCCTCTGGCCTCGTCCTGCGACCACCGCCCGGGCTGCCCGCCGAGGAGATCTGGGGCTGGAGGTGACGCCTGGAGCCCTGAGGGCGGCCGGGCGGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009718-'0-4,'0-0,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.222 C2=0.625
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(7.7=95.7)
A:
PF152421=FAM53=FE(6.0=100)
C2:
PF152421=FAM53=PD(85.6=97.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAACAAAGGTGCCGACT
R:
CTTGTCGGCCAGGCAGTC
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]