GgaINT0041230 @ galGal4
Intron Retention
Gene
ENSGALG00000009718 | FAM53B
Description
family with sequence similarity 53, member B [Source:HGNC Symbol;Acc:HGNC:28968]
Coordinates
chr6:31650337-31658639:-
Coord C1 exon
chr6:31658588-31658639
Coord A exon
chr6:31651071-31658587
Coord C2 exon
chr6:31650337-31651070
Length
7517 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGTGTTTTTTATCATTTCCGAAC
3' ss Score
2.19
Exon sequences
Seq C1 exon
CACACTCCAAAGATGAGTCAAGGACCTACCCTCTTCTCTTGTGGCATTATGG
Seq A exon
GTAAGTAGCAAATTCTGCCCGTATTTCTTTAATCTCCGCTCCTGGATCCTTGGCGATGTGTGGGGAGATGTCCTCATCTCCTGCGCCTCTCCTGCTGCCCTGCACAGCCTGGGGTGCAGCCCACCCACGCCCTGTGCCTTGGGCTTCAGTATTGCCCACCCCACTGCCCCAGTATGGGAACCCCTGCACGGGGGTGGTTTGCTGCCCCGCAGTGCTGAGTGCATTGCTTGTCTCCTTCCACATTGCTTTGTGTGTATCTTTGAAGTTACTCATACAGTTGAGATCATAAGCATTTTGAGTCTGAGATTGTGTTTCTCGTGTGTTCGAGTATCCGTCCCTGAACTACAGCTCTTGACTGTTTGCATGATACAAGTGATAAATATCAGCATTATAGTTGAAAGCATTCTTCCTTTTGGCACAGTGTGTATGGACAAACCTCAGGCAACACCAAAAATGTATTTTTTGCCTTTCACAATGACATAAACTGTTGTATATGATGTTTAATACCGTTTATGGCAGAGCTTGCTACCAGCTGTCTTGCTGAATGGCTACTGAAATTGATGGGGTTTTGGTGCATCAGTCCATGATCCCGAAAAAACAGTAATGCAGGAGGATGTGCCACTATACAGTGCTCTTTGGGTTTTGAAACGGGGAGCCAGTCCCTAGGCGAAGTCTCAGATCCCAATTAAAATTGTAGGTCAAGTTTGAGCCAAGCTACTTGGTATGAAAGCCAGTGCTTTGCAGACAAAGCGACTGCCCCTTTTCTTCGTGGACACAACTCTCATTAGCGTTAATGGGAGCTGAGCACATGCATTGAGAGGAGATGTTTCCCAAGCTCTCTGATAACTTGAGTTGTTTGGAGGAGGGGGGAAAAGATGGAAAATGTTTTGATTTTTTTTTTTCAGATGAAAGTCACAAGCTTCAAAGTCAAGAATGGGCAGGAACAGTCCGTTCCCTTTCTCCTGCCTGTCAAAAATGAGTAAGGAACAAAGAAACCCAATCAGATGGTTTTGTTTTGTGCCATGGCACTGGCAGGCTCTTCCACAAATATGAAGTGTCTAAGCCTAATTGAAAATCAGCTTGGTGTTAATAGCTTTTACAAAGCTGTTTGCGTCTTCCTAGCGCTGCGCTGGTCTTCCTTGGCTGCCAAATTATCCTGTTTCCAAGGGAACCTAATCTCACCTCCTTGACCACAGCTTACCATGTAATTGTCTTTGTCATGCCCAGTCAAGAGGAGCGAGTCTCTGGCATGCGAGAGAGCATTGTTTGGTTTGTGCTTAATTTTAGGCATCTTTCCCGAGGGCTCTTCTTGATGTCTCCAAACTTGGGCCACGATCACAAACCGACCCCGTGATAAAACTTGCTGATGCATTTTGTAAGAGTTGCAGGGTTATGATGGCACTGAACGTGCAGTGAGTGAATATTTCAGTCTGAGAGCGAAAGCATGGAGATGAATGAATCCAGGAAGGTTGGACTGGTGTCCCAACCAGCATCAGCATGGCCTCGTACCACATCCTGAGCAGAGCAAGGCCTGGGCACTGGGGCTTCTCACCACATCAGCCCAGGGATGCGTATCTACTGGAGGGATAGGAAGAAGCTGGCCAAGGCCCCAGGTGTGCATAATACCCCATAACCAACAAACCCAGCTAGCCTGAGCTGGCACATGCTTGTGTGCAGCATAACGTTGGTTTTGGTGTCACTTGCTTCCTGCCTAACACAGCTGCCGGAGCACTTGGGCTAGCAATAGCAGAGAGGATGCCAGGTATGGGGACTGCTCCCATTGCCAAAGCATATATCGGTGTCCTTGGGCCAAATGTGAAGAAGTCAAAACATGAACATGACAAATACCTCAGTATGGCATACCGGCAGCATCACAATGAGCAGCACAAGGCACTCTGCTGATACCAGTGCAGGCAAAACATGCTGAGAACAACTTTGAATGGGAAAGGAGTACACTGATGCCCACACCTTTTAAATGTAAGCATCTCATGAGGTACTGAAGTTTGGGAAGATCCAAAAATCAATTATAACTTTTAAAAAGCGGAATGTATTAGTGAGCTTTATTAAAGACTTGGTGTGTCAGATGATGCAATATTTGATCCACTTCTCAAGGTGAGCTAAATATTTAGGTTTATGTGTGCGATGATAGCAATACTACTAAGAAGACTGTTGAATTTATAGTTCTAGGCATTTCATAGAATCCTAGAATCATAGAATGGCCTGGGTTGAAAAGGACCGCAATGGTCATCGAGTTTCAACCCCCTGCTATGTGCAGGGTTGCCAACCACCAGCCCAGGCTTGATTCTTTTTTCCAGCAAAGGGCTATTTAGAGAAACAAATCCCATTTCCTTTTTCCCTTCTCCTTGATGCGCCCTTAAAACACCCGGGAGTAAAGGAATTGTCCTATTACCGGATGGAGATCCTTTTCTTGCCGTGCATTCTCCACCATGCACCCCTGTGGAAGTATCAGAGGCTGTGCTGGAGAAAGCAGCCAGCATTTTAGAAAGTTTGGGTGTTATTTTTGGCTTGCTGCATTGAGAATTTTCTGTCTGTGGGTGGATGGCAGTGGAAGATTTGCACTATTTTAACAATGCCTTGGCAATATTGCCTGACTCCTCTCCAAGCAGGTATGTGAGAAGCACTTGGCATCTCAATCAGTAGCAGCAAGCAGTACTCTTTTGCAGCCCTCTGCAAGAAGCTCAGTGGGTGTATAATGACAGCCACATCCTCACGTTCTCTGAGAGCAAGAAGTAATCTTTGACCTGACATCATCACCAGGTGACTGCTGGCGAGAGAGAGGTGATGAGGGAGGAATGTTTTGGTTTTACCAAAAATGTGTGGATTTTCCTCTTGTCATATGGCCATGGACACCAAGCACATGTCACCGGGGCACATTCTCAGGCAGTAGGTATGGGTCTGTTGTTTGCATTCCCCATTGAAGCACAGCTCCACACATCTTATTTTGATCTTATTTGTGCCATGGGAAAGCAGGAGGGCTGTCAGGCTCCGTGGTGCTGCCATCAGCTAATTACAACCATTACATTGTTCCACGTTTAGAATCATCTCTTGAACGTAAACAGGGGTGTATGGGAACTGTTGAATCATGGCCTGAACCTCTGATTGACCACCTGAGGCGAGTGCTGAGTCAGCTGCAGGGGCACAGGTGAATGCAATTTCACCTGAGTGACCAGAAGGGGTGGAGCCAGGCACCGTCCCTCCTAGACCCCATTTAAGGGCTGACTCCCAAGGAGGAAGGATCTCCAGCTGGAGATCCTTTCTCTTGGAACCCTTCTGTGAGCCCAGGACACGGGTAAGATCTTTATTTCATTTCTCCTTCGTAACACAATAATCTCTCTGGTCCAATACCTGTATACCTGTTTGCCATACAAGGGGGCAGTGGAAAATAGAAACTGCCTTTCCACGTTTCACAGAGGCTGGGAGACCAACGTTTGATGCAAAGAACGTGTGAAAAAGGGAATTGGATGTGCACCCGAAGGAAGAAAAATGTTTGGGTTAGGATCCAAATGGAGTTTATCTGCCAAAAAGGAGAAGAAAAAAAAATTGATTGAAACCCGTAATTACTTTACAAGTTGCTGTAATAAATTATGTATGAATGTAAATTATTTCACAGGAGAAGAACGTAGGGGAAACTTGAGCAGAAGGATCATGCATTATGTATAGAAAGGAGCCGTAAAAAAAATATTGCAGCAGCACGTTTGTGTCCTGGTAGTTGAAGTTGTGTCAGTGTTTTGATTTGATGCCATTCTCTGTGGTGAGGTTGTTGAAGTTTTGGTGCCCAGGTCTCGGTGTGAGGGCTGTGGTGGTTGCTTCAGGGCTTACTGAAGCTAAAGCATAGAGTGAGGGCATCGTCCAAATACCTCTTGAGCACTCACACTTGGGAATTGGCAGAGAACAGCGAGGTCTCCTCTCAGCCTTATCTCCAGACTGGACAACCTCAATGCCTTCAGCCTCTCCTCACAGGAGTGCCCTCCAGGTATTACATGCTGTTCTGGAGCTGGTGGAGAAGGGACCTGGCAAGTTCTTGTGTGGCCTGTACAAAATGTGGAGCTCAACACATGGAAATCTGCCTACAGTGACCTGGATGCCTTCATCTGATGAGAGCTGGTTGTGCACAGATCTTAAGGATGCTTTGAGGATGGTACCGGTCCCCATGGGTTTGGAACAAAGCTTCTGAGAGCCCCATGACCTGGACCTCTGGGCTGTTTGATGTGATAGAAGTTACCCAGGGGAAAAGATGGATGTTCAAGGCCAGACGTGTGCTTGTGAGAGGAAACACCAAGGTTTTGCCCCAGAGGAAGTTTAGAAGTAGATGATGGTGTTTTAAACCTCATCCTTGTTTTATCGATGGGTGTGTTCAGCAAGGGGCTGGGAGCATTTAGTTCTGCAGTTTCAAGTTAAAATCCAAAGGGAAAAGGCCCAGGCTATTTTGTCTGAGGACACTGACCACCAAGAGGGACCCATGTAAGCAGGGCAGAGCTCCACGTGCCGCATCTACATCATGCCTTGGTTGTCAGTGCCCTTGTGTCGTTTTCTGATGGGCAAACAGTGCTCTCCAGCAAAGCCGTTTAGCTCTGAACTGAGGAATTCTTGTGATGGATTTTGCCCTGGAACAAATTGCTGCCTCTGGGTAAACCAAGCTGAGGTTTGTAATTTAAGAAACTTAATACATGCTTAACCGCAGCAGTATTAATGGTTCCACTGCAATTATTGTTATCAGTGCTCTCAGGATGTGAATCTTAGTCTTAAAAAGTTGAGCAGAAAAACAGACTTTTTCCTCTCGTAAGTGGCTCCCAAGTCTCTTAATTACACCCTCAGTGCTTAGATGATCCCTGTTTCCAATTTATTATTCTGTTGGCATCACTTTGCATCGGAAAAAGACCACGTTCTGGGTTCTTGTGGGGCTTTGCATGGGTGGTTTGTCCTGGGGGGCAGCAGGGGAACGGGGCACCCCATGCGTGTGCATCTCCTGGATGGCAGCAGCCCTGCCAGAGCCCCAGCTTCCTCCAGCACAAGCTGAGCACAAAGGAGGAAAGCAAACAATAACCCGAAGTTGTTGCTCGGGATAACAGTACGCTTGCAATTTTTCTTTGTGATTTGTTGTTTTCTTTTTGAAGGTTTACAGCTGTTTGCGCAGAAGTAATGTCGAAAGAGGAAGGTATCCTGTATCCTCTTGAACAAGCTTACCAAGGCCTTTTGTAAAACGTGACGTCTGGGCATGGGGGTCGTGGCAACTTGCCATAAAAAATTAGCTTCTATTTCTGTTTCTTTTGTCTGGTGACCTGACCCGAGAAATCTCTCTGCTGGCAGCATAATAAGGGGGGAAAAATAATAAAGATCTAAACATAGATGTAATTGTTTAGCGCCGATTTCTCACTTTTCATCGTGCTTTTGGAAATGAGGACAGCAGCAGTTAAGGCACGGCGCGGTGCAGCGCAGGGCTGCTGGGGGATGGAACTGTCCCTGCAGCTGCTGGCAGGGGGGAATAGGGAAAGGAGCCAAGAGGGGTTTATGGGGTGTCAGCTTGCAGGGCCCCAGGTCTGACCTCCCAGCTGGAAGCAGGCACTGATAGGAAGCGGTCTGTACTGTGGCATCTTCCCTGCCATCAGGCTGTACCTGCAGCTGCAGGCTGGGCACGGCTTTGAGTTCATTGCTCGGTTGTCTAAATGGAAAAAAAAAAAAAAACCCAACCCTAAAAAATACTGTACCATTTAGATATGATCACATGAAACTGCAGCGACGGTTAGCTAGCACGGTTTGCCTCCCAACAACAATAACAGTTACCAGAGAAGGTCTGTTGGGTGATGACTTTTTTCCATTGCAGCAGCTGATGGTGCAGCCCTACCATGGTTTTCCTGTTGAGCATCAGCAGCGTGTTTGTACAGAGCCCTGCTGGCCCCAGCAGCCCATGACAAGGAGCCCAGCCCTGACGGTCCTCCTTTCTTCTTTTATAGTCAGGGAACCATGTGTGTGAATGAGATCATCGTGCTTAATCCTCTTTTCACATGGTCATCACTGGGATCTCTGCACGCAGCTGCAGCCTGGTTTGCAGTTTCCCCATGTCCCCACGGATATTAGGAAAAATTCCTCAGAAAGACTGGTAATGCAGTGGCACAGCTGCCCAAGGAGCACTGGGGTCACCGTCCGTGGAGGTGTTGTAGAGCCATGGGGATTTGGCATTGGTGGACGTGCTCATTGGGCACAATGGGGATGGGCTGGGATTGGGCTTGAGGATCCTAAAGGTCTTTTCCAACCTTCCTGATTCTCCGGTTCTATGAAGTGGCTTTTGGCCCATTGCTGTACACGTTTTGGATGCAGTTACAAACCATTGACTTTGGAGATACAGGTTTCTCAGATCTTTACACAGAACCCCAAAGCCCGTCTCATAAAATGAATACCTGCACGCCATCCCCTGAAACCTGCAGATTTGAAAGATCAGTGCGAAATGTGCAAAACTGGTGGACACAGCAGCACGGGTGACTGGGGAGATTGGCGTCTGGGCCAAAGCACCAGGAAACCCCAGTTTGGGGGGGGAAGGATGGGAGGTGGGCATCTAACACAGCATCAGCCAGCACAGAGATTGTTACGTGCTCTAACTTCTGTTAGACGCGGTGTCGTTGGGTAGCTGTTGGATACTGGGGAAGTTCTTTACCAAGACAGTGGTGAGGTGCTGGAACAGCTGCCCAGAGAGGCTGTGGATGCCCCATCCCTGGAGGTGTTCAAGGCCGGGTTGGATGGGGCCCTGGGCAGCCTGCTCTGATATTAGATATGGAGGTTGGTGGCCCTGCCTGTGGCGGGTGGGGGTCGGAGCTTGATGATCCTTGAGGTCCTTTCCAACCCAAGCCATTCTGTGATTCTCTAGCTGTGGGAGAGGTGCTCAGAGCCTTAGTGGGGATGAAGTTTTATTGGCTTCACTGGAGCAATGCTGTTTCAGCAATTAGCAAGTAAGACAGCCCAGTGGGCATATGGCTCTGGCATCCTGTAGGTTTTGATGTCCTGTCTGTATTTCTCTGCCCACAGTGGTGGTTACAGCCTCTGCCATGGGAAGCCCCCAGGTCCACCTCAGCCTGGTGTTGCAGCAGCTTTGGGCCCTGACTTTGGTTTTTTTTGTGCGCCTCTCAGGCAACCATTGCTTGTGGAGTCTGAGATGAAAGGAAAGCATCCAAGTCATGATCTACTCTAGGGACACAGTACCGACCGTGTCATTTCATAATGCTGGATGCCCCTTAGCCAGTGCAGTCTGGATATTCAAAGGCAAATTTCCATCATCTTCTAGCAGTTTTGCTTCTGCAATTATCGCTTTGTCTCTCTCTCTCTCTCTCTCTCCATCTATGTCACAGTAACCATTGTGCTGGCGGTTCGGAAAACCATATTCCGAGAGTTAATTAATTTGTACTGAAAAACGTCCCATATGCTACTCTTTGTTTATGCGCGTGGAAAGCGAATCACGGCATTAATTAACGCTAATGCCTGTGGGTGTGTGTTTTTTATCATTTCCG
Seq C2 exon
AACCAGAAAATGACAGATGGGGAGACCTCAGCAGGAAATGTCCACTGCAGATCGAGCAGCCGGGCACCAACATCTGGGACTGCCTGGCCGACAAGGGCGAGGAGGGCACGCTGTGGCCGCGGGAGGCCACCAGCACCTGCTCGGTGACCAACCTCATCAAAGAGCTCAGCCTCAGCGATCCTCACAGCAACCCATCGGCGCCGCCCAGCAAGCGCCAGTGCCGCTCGCTGTCTTTTTCGGATGAAATGTCCAGCTGCAGGACATCATGGAGACCTTTGGGCTCCAAGGTCTGGACGCCGGTTGAGAAGAGGCGGTGTTACAGCGGGGGGAGCGTCCAGCGCTACTCCAACGGCTCGGCCACCATGCAGAGGAGCTCCAGCTTCAGCCTGCCGTCCCGCTCCCATCCTCTGGCCTCGTCCTGCGACCACCGCCCGGGCTGCCCGCCGAGGAGATCTGGGGCTGGAGGTGACGCCTGGAGCCCTGAGGGCGGCCGGGCGGACATGCAGCGCTCCCTGTCCTGCTCTCATGACCGCTTCTCCTCCTCGGAGCCCGGCCCGCCCTCAGCCAGCAGCACGCCGGCCTCCACGCCACAGCTGGGCCGCCGTGCCGGTGGGCTGTGCCGCAGCCGCTCGCAGCCCTGTGTCCTCAATGACAAGAAGGTGGGTGTCAAGCGGCGCCGGCCCCAGGATGCGCAGGAGCCACGGCCTTCGCTGGACCTGGCCAAGATGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009718:ENSGALT00000015817:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.618
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(27.0=100)
A:
NA
C2:
PF152421=FAM53=FE(85.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]