GgaEX1024557 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11709559-11710615:-
Coord C1 exon
chr10:11710490-11710615
Coord A exon
chr10:11710185-11710307
Coord C2 exon
chr10:11709559-11709717
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTGTTCTCTTCTAGATG
3' ss Score
12.72
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAAGAATTGCCTGGGCTCTGCCAAGGAGGAAAATGTATTAATACATTTGGTAGCTTCCAGTGTCAATGTCCATCAGGTTACTATTTGAATGAGGAGACTCGAGTATGTGATG
Seq A exon
ATGTGAATGAGTGTGATACACCTGGCATTTGTGGACCTGGCACATGTTACAATACTGTTGGGAACTACACCTGCATCTGTCCTCCTGATTACATGCAAGTCAACGGAGGGAACAACTGTATGG
Seq C2 exon
ATATGAGAAGAAGTCTATGCTACAGAAATTACTATGCTGACAATCAAACCTGTGATGGCGAACTACTCTTTAATATGACCAAGAAAATGTGCTGCTGTTCGTACAACATTGGACGTGCATGGAATAAGCCTTGTGAACAGTGTCCCATCCCTAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'41-47,'41-46,43-47=AN
Average complexity
A_S
Mappability confidence:
75%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(48.6=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF0068312=TB=PU(86.4=70.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGAATTGCCTGGGCTC
R:
GGCTTATTCCATGCACGTCCA
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]