GgaEX1024557 @ galGal4
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9693336-9704171:-
Coord C1 exon
chr10:9704046-9704171
Coord A exon
chr10:9703741-9703863
Coord C2 exon
chr10:9693336-9693452
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTGTTCTCTTCTAGATG
3' ss Score
12.72
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAAGAATTGCCTGGGCTCTGCCAAGGAGGAAAATGTATTAATACATTTGGTAGCTTCCAGTGTCAATGTCCATCAGGTTACTATTTGAATGAGGAGACTCGAGTATGTGATG
Seq A exon
ATGTGAATGAGTGTGATACACCTGGCATTTGTGGACCTGGCACATGTTACAATACTGTTGGGAACTACACCTGCATCTGTCCTCCTGATTACATGCAAGTCAACGGAGGGAACAACTGTATGG
Seq C2 exon
ATATTAATGAATGTGAGAGAGATGCCTGTGCCAATGGAACCTGTAGAAACACCATTGGCTCTTTCAACTGCCGCTGCAATTTGGGATTCATCCTCTCGCACAACAATGACTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960_MULTIEX1-33/41=32-39
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF062476=Plasmod_Pvs28=FE(36.1=100),PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGATGAATGTCAAGAATTGCCTG
R:
CTATGCAGTCATTGTTGTGCGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]