GgaEX1027590 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13651109-13652349:+
Coord C1 exon
chr1:13651109-13651197
Coord A exon
chr1:13651591-13651660
Coord C2 exon
chr1:13652303-13652349
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTGAAACTTCTTGTATAGTTT
3' ss Score
4.54
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TGTCCAAGTATTTAGCCTTGCTAATTGAAATTCATCCCATTAATAATGTGAAAGTCCTAAAGGCTGTGGATAGCTGTGTTCGAGTGCAG
Seq A exon
TTTCTTTATCCAGTGGAAGACAGAAATAGTTCTACAGAAAGTCATCTTTTGCTCGTTTCAGAAGATAAAT
Seq C2 exon
ACATCGAACAATTCGATATTCACGTTGCAGAAGAGGAACACAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAAGTATTTAGCCTTGCT
R:
CACTCTGTGTTCCTCTTCTGCA
Band lengths:
136-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]