MmuEX6016088 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21217382-21222439:+
Coord C1 exon
chr5:21217382-21217482
Coord A exon
chr5:21221226-21221295
Coord C2 exon
chr5:21222390-21222439
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTCCCTTTCTACAGTTC
3' ss Score
7.82
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CTCTGTAGGATCGAAGTGCCTAACTTTGCTGGTAGAAATACACCCTGTTAACAACGTGAAGGTTCTGAAAGCAGTGGATAGCTGTGTTTGGGTACAGGTAG
Seq A exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTCCACAGAACCACCTGCTACTGATCTCAGAAGAGAAAT
Seq C2 exon
ATATTGAGCGGTTTCATATCCAGATCACCAGAGAAGATGGAGACAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'8-9,'8-8,9-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTAGGATCGAAGTGCCT
R:
CACTCTGTCTCCATCTTCTCTGG
Band lengths:
151-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types