MmuEX6016088 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20723208-20728257:+
Coord C1 exon
chr5:20723208-20723296
Coord A exon
chr5:20727044-20727113
Coord C2 exon
chr5:20728208-20728257
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTCCCTTTCTACAGTTC
3' ss Score
7.82
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATCGAAGTGCCTAACTTTGCTGGTAGAAATACACCCTGTTAACAACGTGAAGGTTCTGAAAGCAGTGGATAGCTGTGTTTGGGTACAG
Seq A exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTCCACAGAACCACCTGCTACTGATCTCAGAAGAGAAAT
Seq C2 exon
ATATTGAGCGGTTTCATATCCAGATCACCAGAGAAGATGGAGACAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCTAACTTTGCTGGTAGA
R:
ACTCTGTCTCCATCTTCTCTGGT
Band lengths:
132-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: