GgaEX1027892 @ galGal3
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4892229-4893853:-
Coord C1 exon
chr19:4893701-4893853
Coord A exon
chr19:4893012-4893190
Coord C2 exon
chr19:4892229-4892375
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTTGTCCTCCTCAGATT
3' ss Score
10.59
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTGAAAATGCAGGCGCAGGCCAGCGGTGTGCCACAGGAGGACATCTACACACTGCCGGTTGGCATCCGCACCGTGCACGTCACCAGCACGCAGTTCCTCATCAACGGAAAGCCCTTCTACTTCCACGGGGTCAACAAGCACGAGGACGCGGAT
Seq A exon
ATTCGTGGCAAAGGCCTGGACTGGGCACTGATCGTTAAGGACTTCAACCTGCTGCGCTGGTTGGGGGCAAACTCCTTCCGTACCAGCCACTACCCCTATGCTGAGGAGATCATGGACCTGTGTGACACCTACGGCATCGTGGTGATTGATGAGTGCCCGGGAGTGGGGATTAAGATGCC
Seq C2 exon
TGAGAGCTTTGGGAACAAATCTCTACAGCATCATCTCGTTGTGATGGAGGAACTGATCCGCAGGGATAAGAACAGGCCCTCAGTTGTGATGTGGTCAGTAGCCAATGAGCCGGCATCAGAGCTGCCCCCAGCAGCTTACTACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=PD(21.6=43.1),PF0283612=Glyco_hydro_2_C=PU(8.6=51.0)
A:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTACACACTGCCGGTTGG
R:
GAAGTAGTAAGCTGCTGGGGG
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]