RnoEX6064105 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30206721-30207501:+
Coord C1 exon
chr12:30206721-30206864
Coord A exon
chr12:30207078-30207256
Coord C2 exon
chr12:30207355-30207501
Length
179 bp
Sequences
Splice sites
3' ss Seq
GCAACCCTGCTGTCTCCTAGATC
3' ss Score
6.27
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGACGATGACAACACCTGAGTCTGTGTCTGACTTCTATACCCTCCCTGTCGGGATTCGAACAGTGGCTGTCACAAAGAGCAAGTTCCTCATAAATGGGAAGCCTTTCTACTTCCAAGGCGTCAACAAGCATGAGGATTCAGAT
Seq A exon
ATCCGAGGGAGAGGCTTCGACTGGCCTCTGCTGATAAAGGATTTCAACCTCCTCCGTTGGCTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCGGAGGAGGTACTTCAGCTCTGTGACCGATATGGAATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATCGTGCTGCC
Seq C2 exon
CCAGAGTTTTGGCAACGTGTCTCTTCGGCACCACCTAGAGGTGATGGACGAGCTGGTGCGCAGGGACAAAAATCACCCTGCGGTCGTGATGTGGTCTGTGGCCAATGAGCCTGTCTCTTCTCTGAAACCTGCCGGATATTACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=PD(19.2=39.6),PF0283612=Glyco_hydro_2_C=PU(8.6=54.2)
A:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGATGACAACACCTGAGT
R:
ATTGGCCACAGACCACATCAC
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]