GgaEX1028752 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11997486-11998918:+
Coord C1 exon
chr6:11997486-11997634
Coord A exon
chr6:11997741-11997860
Coord C2 exon
chr6:11998823-11998918
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTGACTGTTCTCTTTAAAGCTG
3' ss Score
9.03
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGAACGGAGACTTTCTGGCGCTTGACCTTGGAGGGACAAACTTCAGAGTGTTGCTGGTGAAAATTCGCAGTGGTAAAAGGAGAACGGTTGAAATGCACAACAAGATCTATGCAATTCCTATAGAGGTGATGCAGGGAACGGGAGAAGAG
Seq A exon
CTGTTTGACCACATCGTTACCTGCATTTCGGACTTCCTGGATTATATGGGAATAAAAGGTGCACGGCTTCCTCTTGGCTTCACATTCTCCTTCCCTTGCAAGCAGACCAGTCTGGACGCT
Seq C2 exon
GGTATCCTTCTCAACTGGACAAAAGGTTTCAAAGCTACAGACTGTGAGGGTGAAGACGTGGTGTATTTGCTAAGAGAAGGAATTAAAAGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGGAGACTTTCTGGCGC
R:
TAATTCCTTCTCTTAGCAAATACACC
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]