MmuEX6048717 @ mm10
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62281811-62284849:-
Coord C1 exon
chr10:62284701-62284849
Coord A exon
chr10:62284279-62284398
Coord C2 exon
chr10:62281811-62281906
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCATCCCTTTTCTCTTCCAGCTG
3' ss Score
11.42
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
AGCATGGTGACTTCCTGGCCTTGGATCTCGGAGGAACGAATTTCCGAGTCCTACTGGTAAAGATCCGTAGTGGGAAAAAGAGAACAGTGGAGATGCACAACAAGATCTACTCCATTCCCCTGGAAATCATGCAGGGCACCGGGGATGAG
Seq A exon
CTGTTTGATCACATTGTCTCCTGCATCTCCGACTTCCTGGACTACATGGGGATCAAAGGCCCCCGGATGCCTCTGGGCTTCACCTTCTCGTTTCCCTGCAAGCAGACGAGCCTAGATTGC
Seq C2 exon
GGAATCTTGATCACGTGGACAAAGGGATTCAAAGCCACCGACTGTGTGGGTCACGATGTAGCCACTTTACTGAGGGATGCTGTAAAAAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'48-42,'48-41,51-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGACTTCCTGGCCTTG
R:
TCTCTCCTTTTTACAGCATCCCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types