RnoEX0041999 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31923627-31926306:-
Coord C1 exon
chr20:31926229-31926306
Coord A exon
chr20:31925836-31925955
Coord C2 exon
chr20:31923627-31923722
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCCTTTCTCTTAAAGCTG
3' ss Score
10.68
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGGAAAAAGAGAACAGTGGAAATGCACAACAAGATCTACTCCATTCCCCTGGAAATCATGCAGGGCACCGGGGATGAG
Seq A exon
CTGTTTGACCACATCGTCTCCTGCATCTCTGACTTCCTGGACTACATGGGGATCAAAGGCCCCCGGATGCCTCTGGGCTTCACCTTCTCATTTCCCTGCCATCAGACGAACCTGGACTGT
Seq C2 exon
GGAATCTTGATCTCATGGACAAAGGGTTTCAAAGCCACTGACTGTGAGGGCCATGATGTAGCCTCCTTACTGAGGGATGCGGTGAAGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'28-30,'28-27,30-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(12.2=100)
A:
PF0034916=Hexokinase_1=FE(19.0=100)
C2:
PF0034916=Hexokinase_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAAAGAGAACAGTGGAAATGC
R:
TCTCTCCTCTTCACCGCATCC
Band lengths:
173-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]