GgaEX1030893 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69861491-69866891:-
Coord C1 exon
chr1:69866784-69866891
Coord A exon
chr1:69864373-69864565
Coord C2 exon
chr1:69861491-69861616
Length
193 bp
Sequences
Splice sites
3' ss Seq
CATGTACATTTTATTTATAGATT
3' ss Score
7.45
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTGGCTCGTCACAATAAAACACTGCAGCAGATGCTGAAGCCAGGGTCAGATCCAGACGAAGGAGATGAAGCCTTGAGCCATTACGCCAATCATACAGCACAGATAGAG
Seq A exon
ATTGTTCGTCATGACAGAACAATGGAACAGATTGTCTTCCCTGTCCCCAATATTTGTGAATTTCTCACTCGGGAATCCAAAAGTCGGGTATTCAATACAACAGAGAGAGATGAACAAGGGAGCAAAGTCAATGACTTCTTCCAACAGACAGAAGATCTGTACAATGAGATGAAATGGCAAAAGAAAATTAGGA
Seq C2 exon
ATAATCCACTCCTATTTTGGTTCTCAAGACACATCTCTCTCTGGGGAAGTATTTCCTTCAACCTTGCTGTATTCATCAACTTAGCAGTTGCTCTATTCTATCCCTTTGGAGATGATGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'52-59,'52-58,53-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTCGTCACAATAAAACACTG
R:
CTTCATCTCCATCATCTCCAAAGGG
Band lengths:
234-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]