MmuEX6007942 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146187440-146194620:-
Coord C1 exon
chr6:146194513-146194620
Coord A exon
chr6:146190456-146190648
Coord C2 exon
chr6:146187440-146187565
Length
193 bp
Sequences
Splice sites
3' ss Seq
CGAACGCCGATCATTTCCAGATT
3' ss Score
3.91
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TTGGCCCGCCACAACAAACTGCTGCAGCAGATGCTCAAGCCGGGATCTGACCCAGAGGAAGGGGATGAAGCTTTGAAGTATTACGCCAACCACACCGCGCAGATCGAG
Seq A exon
ATTGTGCGGCATGACCGGACTATGGAGCAGATTGTTTTCCCGGTCCCCAACATCTGTGAATTCCTCACTCGGGAATCCAAGTACCGAGTGTTCAACACAACGGAGAGGGATGAGCAAGGAAGCAAGGTGAACGACTTCTTCCAGCAAACGGAAGATCTCTACAACGAGATGAAATGGCAAAAGAAGATCAGAA
Seq C2 exon
ACAACCCCGCCCTGTTCTGGTTCTCCAGGCACATCTCACTCTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACCTGGCTGTGGCTCTCTTCTACCCATTCGGGGATGACGGTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'83-75,'83-72,85-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAACAAACTGCTGCAG
R:
TTCATCACCGTCATCCCCGAA
Band lengths:
226-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types