BtaEX6023514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83859321-83867249:+
Coord C1 exon
chr5:83859321-83859428
Coord A exon
chr5:83864358-83864550
Coord C2 exon
chr5:83867124-83867249
Length
193 bp
Sequences
Splice sites
3' ss Seq
TGCAAATTAATGTTTTTCAGATT
3' ss Score
7.73
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTGGCCCGCCACAACAAACTTTTACAGCAGATGCTCAAACCAGGATCCGATCCAGATGATGGCGATGAAGCCTTGAAGTATTATGCCAACCATACTGCACAGATCGAG
Seq A exon
ATTGTTCGACATGACAGGACAATGGAACAAATAGTATTTCCTGTCCCCAATATATGTGAATACCTCACGCGAGAATCCAAGTGTCGCGTATTCAACACCACGGAGAGGGATGAACAGGGAAGTAAAGTGAATGACTTTTTCCAGCAAACTGAAGATCTCTACAATGAGATGAAGTGGCAGAAGAAAATCAGGA
Seq C2 exon
GTAATCCTGCCCTGTTCTGGTTCTCAAGGCATATTTCTCTTTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACTTAGCTGTGGCTCTCTTCTACCCATTTGGGGACGATGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'60-65,'60-64,61-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGCCACAACAAACTTTTA
R:
CATCTCCATCGTCCCCAAATGG
Band lengths:
228-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]