DreEX0040331 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35567503-35573278:-
Coord C1 exon
chr11:35573171-35573278
Coord A exon
chr11:35571125-35571356
Coord C2 exon
chr11:35567503-35567631
Length
232 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTTTTCTCTTACAGATC
3' ss Score
14.68
5' ss Seq
CTTGTGCGT
5' ss Score
3.56
Exon sequences
Seq C1 exon
CTAGCCAGACACAACAAGGAACTCCAGGCTATGCTGAAGCCAGGAGGGACGTATGGGGAGGGAGATGAAGCTTTGGAGTTCTACGCCAAACACACAGCTCAAATTGAG
Seq A exon
ATCGTCCGCCTGGATCGCACAATGGAACAGATTGTATTTCCCGTCCCCAACATTTGCGAATTCCTAACCCAGGAGTCCAAGCTTCGCGTCTATTACACCACAGAACGCGACGAGCAGGGCAGCAAGATCAATGACTTCTTCTTGCGCTCTGAAGACCTTTTTAATGAGATGAACTGGCAGAAGAAGCTGCGAGGTACTCAAGAGGCCACTGGTAACGCAAACTCCGTGCCTT
Seq C2 exon
CTCAGCCCATCCTGTACTGGTGTTCCCGTAACATGTCCTTTTGGAGCAGCATTTCCTTTAACCTCGCCGTCCTCATGAACCTCTTGGTAGCATTCTTCTATCCACTGGAAGGTGGAGGTGTCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'58-57,'58-56,61-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAGACACAACAAGGAACTC
R:
CTCCACGGACACCTCCACC
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]