MmuEX6005992 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108439809-108449224:+
Coord C1 exon
chr6:108439809-108439913
Coord A exon
chr6:108443695-108443887
Coord C2 exon
chr6:108449102-108449224
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCATGTTAACCCTAGATT
3' ss Score
7.47
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGGGATGAAGCTCTGGAGTTCTACGCGAAGCACACAGCACAAATTGAG
Seq A exon
ATTGTCAGACTGGACCGGACAATGGAACAGATCGTCTTCCCTGTGCCCAGCATCTGTGAATTCCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGCGGGATGAGCAAGGTAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAACGAGATGAACTGGCAGAAGAAACTTCGAG
Seq C2 exon
CCCAGCCTGTCTTGTACTGGTGTGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTATCCATTTAAAGGAGTAAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'62-64,'62-63,64-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCGGCATAACAAAGAACT
R:
CTCCCCTTACTCCTTTAAATGGA
Band lengths:
227-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: