GgaEX0012012 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18504943-18512253:+
Coord C1 exon
chr12:18504943-18505047
Coord A exon
chr12:18505869-18506061
Coord C2 exon
chr12:18512078-18512253
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCAATAAGACTGTTGTTCAGATT
3' ss Score
0.27
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
Seq A exon
ATTGTCAGGTCAGACCGTACGATGGAGCAGATCGTCTTCCCTGTGCCCAATATATGTGAATTCCTCACCAAGGAGTCCAAGCTGCGGATATATTACACCACGGAGAGGGATGAACAAGGCAGTAAAATCAATGATTTCTTCATGAAATCAGAAGACCTCTTTAATGAGATGAACTGGCAAAAGAAATTACGAG
Seq C2 exon
GTACTTTGGAGCCCCACTTGTCAGGCTTGCTGTGGACAGCTATGCTGATTTCTCTGGCTATAGTCATTGCTCTTCCTAAGCCCCACGGCATCCGAGCCTTAATAGCTTCTACAATATTACGACTAATATTTTCAGTTGGTTTACAACCTACTTTATTTCTTCTGGGTGCATTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.4=45.8)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGAGGTCAGATTGAGG
R:
GTTGAATGCACCCAGAAGAAAT
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]