RnoEX6014523 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140520937-140530136:+
Coord C1 exon
chr4:140520937-140521041
Coord A exon
chr4:140524552-140524744
Coord C2 exon
chr4:140530014-140530136
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCGTTTTAACCCTAGATT
3' ss Score
9.83
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGCGATGAAGCTCTGGAGTTCTATGCGAAGCACACAGCACAAATTGAG
Seq A exon
ATTGTCAGACTGGACCGAACTATGGAACAGATTGTCTTCCCTGTGCCCAGCATCTGTGAATTTCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGAGGGATGAGCAAGGCAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAATGAGATGAACTGGCAGAAGAAACTTCGAG
Seq C2 exon
CCCAGCCTGTCTTGTACTGGTGCGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTACCCATTTAAAGGAGTGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'84-86,'84-84,86-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCGGCATAACAAAGAACT
R:
TCCTCTCACTCCTTTAAATGGGT
Band lengths:
226-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]