Special

BtaEX6093966 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21669249-21678052:-
Coord C1 exon
chr22:21677948-21678052
Coord A exon
chr22:21674787-21674979
Coord C2 exon
chr22:21669249-21669371
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCTCCGTTTTTTCACCCTAGATT
3' ss Score
10.67
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TTGGCTCGACATAACAAAGAGCTTCAGACCATGCTGAAACCCGGCGGCCAGGTGGATGGAGACGAAGCTCTGGAGTTTTATGCCAAGCACACGGCCCAGATAGAG
Seq A exon
ATTGTCAGGTTAGACCGAACCATGGAGCAGATTGTCTTCCCCGTGCCCAGTATATGTGAATTCCTAACCAAAGAGTCAAAACTACGGATATACTACACCACAGAGAGGGACGAGCAGGGCAGCAAGATCAACGACTTCTTCCTGCGGTCCGAGGACCTCTTCAATGAGATGAATTGGCAGAAGAAGCTCAGAG
Seq C2 exon
CCCAGCCCGTCCTGTACTGGTGCGCCCGCAACATGTCTTTCTGGAGTAGCATTTCATTCAACCTGGCCGTCCTGATGAACCTGCTTGTGGCGTTTTTCTACCCTTTTAAAGGAGTCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'59-61,'59-59,60-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACATAACAAAGAGCTTCAGACC
R:
CCTTTAAAAGGGTAGAAAAACGCCA
Band lengths:
212-405
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]