DreEX6049550 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21300235-21302975:+
Coord C1 exon
chr8:21300235-21300312
Coord A exon
chr8:21300763-21300955
Coord C2 exon
chr8:21302853-21302975
Length
193 bp
Sequences
Splice sites
3' ss Seq
TATTGGTGTATCACATGCAGATT
3' ss Score
6.05
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTCAATCTGAACAAGCAGCAGGAGGAGGAAAAGGAGGATCCACTAGAGCACTACGACCGTCAAACTGCTCAGATTGAG
Seq A exon
ATTGTTCGTGAAGATCGCAGCATGGAGCAGATTGTGTTTCCTGTTCACCCTATCTGTGAGTTTCTTACGGAGGAGTCAAAGTTTCGAGTGTTCACCACCACGGAGCAGGACGAGCAGGGCAGCAAAGTCACAAACTTCTTCGAGCAGACCTCCTTCCTCCACAACGAGATGGAATGGCAGAAAAAGCTTCGCA
Seq C2 exon
GCATGCCGGTGCTGTACTGGTTCTCTCGCAGAATGTCTCTCTGGGGCACCATATCTTTCAACCTGGCTGTTTTCATCAATCTTATCATCGCTTTGTTTTACCCTCATGACTCTGGTCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'57-57,'57-56,58-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCTGAACAAGCAGCAGGA
R:
GACCAGAGTCATGAGGGTAAAACA
Band lengths:
194-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]