MmuEX6076228 @ mm9
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27252618-27253242:+
Coord C1 exon
chr17:27252618-27252728
Coord A exon
chr17:27252831-27253023
Coord C2 exon
chr17:27253117-27253242
Length
193 bp
Sequences
Splice sites
3' ss Seq
GGTGTCACCGGGCCAATCAGATT
3' ss Score
0.37
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
Exon sequences
Seq C1 exon
CTCAGCCTCAACAATAAGCAGCTGTCCCAGATGCTCAAGTCCTCGGCCCCCGCCCAGGAGGAGGAAGAGGACCCGCTGGCCTACTATGAGAATCACACCTCGCAGATTGAG
Seq A exon
ATTGTGCGGCAAGACCGAAGCATGGAGCAGATCGTGTTCCCGGTACCTGCCATCTGCCAGTTCCTGACAGAGGAGACGAAGCACCGGCTCTTCACCACCACTGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCCGGCTTCGCA
Seq C2 exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGCAGCATCTCCTTCAACCTGGCTGTGTTCATCAATATCATCATTGCCTTCTTCTACCCCTATGTGGAGGGCGCTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTCAACAATAAGCAGCT
R:
GTGGAAGCGCCCTCCACATA
Band lengths:
234-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: