GgaEX1030913 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4567007-4568696:-
Coord C1 exon
chr26:4568586-4568696
Coord A exon
chr26:4567986-4568178
Coord C2 exon
chr26:4567007-4567132
Length
193 bp
Sequences
Splice sites
3' ss Seq
AGGGCATTTTATTCCTCCAGATT
3' ss Score
6.29
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
CTCAGCCTCAATAACAAGCAGCTGACGCAGATGCTGAAGTCGACGGCCCCCGTCCAGGAGGAGGAGGAGGACCCGCTGGCGTACTACGAGAAGCACACATCCCAGATTGAG
Seq A exon
ATTGTGCGCCTGGACCGCAGCATGGAGCAGATAATCTTCCCAGTGCCTGGCATCTGCGAGTTCCTCACCAAGGAGACCAAGTACCGACTCTTCACCACGACGGAGCAGGATGAGCAGGGCAGCAAAGTCAGTGATTTCTTCGACCAGTCGTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAACTGCGCA
Seq C2 exon
GCATGCCGCTGATGTACTGGTTCTCCCGCAGAATGACTCTCTGGGGAAGCATTTCCTTCAACCTGGCTGTCTTCATCAACATAATCATTGCTTTCTTCTACCCTTATGTTGAGGCCACTTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'53-57,'53-56,54-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCAATAACAAGCAGCTGA
R:
CCATGGAAGTGGCCTCAACAT
Band lengths:
234-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]