BtaEX6096973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7748809-7749588:+
Coord C1 exon
chr23:7748809-7748919
Coord A exon
chr23:7749048-7749240
Coord C2 exon
chr23:7749463-7749588
Length
193 bp
Sequences
Splice sites
3' ss Seq
CAGGCTCCCTTTCCATCCAGATC
3' ss Score
8.75
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
Exon sequences
Seq C1 exon
CTCAGCCTCAACAACAAGCAGCTGACGCAGATGCTCAAGTCCTCAGCCCCGGTGCAGGAGCAGGAAGAGGACCCTCTGGCCTACTATGAGAACCACACCTCCCAGATAGAG
Seq A exon
ATCGTGCGGCAGGACCGCAGCATGGAGCAGATCGTGTTCCCCGTGCCCGGCATCTGCCAGTTCCTGACGGAGGAGACCAAGCACCGTCTCTTCACCACCACCGAGCAGGATGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCAAGCTCCGCA
Seq C2 exon
GCATGCCACTCATCTACTGGTTCTCCCGCCGCATGACTCTCTGGGGCAGCATCTCCTTCAACCTGGCAGTCTTTATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAGGGCGCGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'55-54,'55-53,57-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(8.9=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCTCAACAACAAGCAG
R:
CCCTCCACGTAGGGGTAGAAG
Band lengths:
226-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]