HsaEX6046679 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33688057-33688781:+
Coord C1 exon
chr6:33688057-33688167
Coord A exon
chr6:33688239-33688431
Coord C2 exon
chr6:33688656-33688781
Length
193 bp
Sequences
Splice sites
3' ss Seq
CATGTGCTGTGTGTGCTCAGATT
3' ss Score
9.35
5' ss Seq
GCAGTGAGG
5' ss Score
2.19
Exon sequences
Seq C1 exon
CTCAGCCTCAACAACAAGCAGCTGTCACAGATGCTCAAGTCCTCAGCGCCAGCACAGGAGGAGGAGGAAGACCCCCTGGCCTACTATGAGAACCACACGTCCCAGATCGAG
Seq A exon
ATTGTGCGGCAGGACCGCAGCATGGAGCAGATCGTGTTCCCAGTGCCCGGCATCTGCCAGTTCCTGACGGAGGAAACCAAGCACCGGCTCTTCACCACTACTGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCAAGCTCCGCA
Seq C2 exon
GCATGCCGCTGATCTACTGGTTCTCCCGCCGCATGACCCTGTGGGGCAGCATCTCCTTCAACCTGGCCGTGTTTATCAACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGCGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'102-112,'102-108,105-112=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTCAACAACAAGCAGC
R:
GACGCGCCCTCCATGTAAG
Band lengths:
231-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains