DreEX6023163 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39981219-39983120:+
Coord C1 exon
chr6:39981219-39981314
Coord A exon
chr6:39981400-39981592
Coord C2 exon
chr6:39982998-39983120
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTTTGAATACACAGATA
3' ss Score
6.63
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CTGTCGCGTCACAATAAGGAATTGCAAATACTACTGAAACCAGGTGGAGAGGACCAGGCCCTGGAGTATTACACAAAACACACCTCACAGATAGAG
Seq A exon
ATAGTTCGACAGGATCGCACTATGGAACAGATTGTGTTTCCTGTACCAAATATCTGCTCTTTTCTGACAAATGAGTCCAAGCTGCGTGTGTACTATGGTACAGAGAGAGACGAGCAAGGCAGTAAAATAAATGACTTCTTCTTGCATGCAGACGACCTCTTTAATGAAATGAGGTGGCAGAAAAAACTAAGAG
Seq C2 exon
CTCAGCCAGTGCTGTACTGGTGCAGCAGGAACATGTCGTTTTGGAGTAACGTTTCCTTTAATCTGGCGGTGCTCATTAATTTGCTGGTGGCATTTTTCTACCCTCTGGATGGAGTGAGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'52-62,'52-60,53-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGCGTCACAATAAGGAA
R:
TTCGCTCACTCCATCCAGAGG
Band lengths:
218-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]