GgaEX1030899 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:68027036-68033042:-
Coord C1 exon
chr1:68032884-68033042
Coord A exon
chr1:68028508-68028569
Coord C2 exon
chr1:68027036-68027134
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTCCTGATTCCACTTTGCAGGTT
3' ss Score
8.34
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGTAACAAGTACCTCACAGTTAATAAGAGATTACCAGCTCTGCTAGAGAAGAATGCTATGCGAGTGTCTTTGGATGCTGCAGGGAATGAGGGATCATGGTTTTATATACAACCATTCTGGAAACTAAGGAGCGAAGGTGACAAT
Seq A exon
GTTGCAAGCCTGATGGTTTTTTGATTAATGAATTGTCTGGTCTTAACTTCTTAAAATGGTCT
Seq C2 exon
GTTGTTGTTGGAGATAAAGTTGTACTGATGCCAGTCAATGCAGGGCAGCCACTGCATGCTAGCAACATTGAACTTCTAGATAACCCTGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(31.1=100)
A:
PF087096=Ins145_P3_rec=PD(1.7=25.0)
C2:
PF087096=Ins145_P3_rec=FE(19.2=100)
Main Inclusion Isoform:
ENSGALT00000022784fB8544
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGGATGCTGCAGGGAA
R:
ATGTTGCTAGCATGCAGTGGC
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]