RnoEX0045427 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180714105-180718623:-
Coord C1 exon
chr4:180718465-180718623
Coord A exon
chr4:180717179-180717235
Coord C2 exon
chr4:180714105-180714203
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTGTAAATTCAATTCCACAGGAC
3' ss Score
7.72
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGCAACAAGTACCTCACCGTGAACAAGAGGTTACCTGCCTTACTGGAGAAGAATGCCATGCGTGTGTCCCTGGATGCTGCAGGGAACGAAGGGTCCTGGTTCTACATCCATCCCTTCTGGAAGCTGAGAAGCGAGGGTGATAAT
Seq A exon
GACATGCACGCCATGATTTAATTGGGTTAATAAGTTTTCTGGCGATGTCTTCCTTAG
Seq C2 exon
ATCGTCGTGGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCCTGGACAACCCCGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(29.7=100)
A:
PF087096=Ins145_P3_rec=PD(1.6=28.6)
C2:
PF087096=Ins145_P3_rec=FE(18.3=100)
Main Inclusion Isoform:
ENSRNOT00000040645fB7099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGAATGCCATGCGT
R:
GCCCAGCATTTACAGGCATCA
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]