GgaEX1032835 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7842931-7844958:-
Coord C1 exon
chr20:7844824-7844958
Coord A exon
chr20:7843159-7843296
Coord C2 exon
chr20:7842931-7842983
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCCTCTTTTGCAGCCT
3' ss Score
11.16
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
CTTGCTCCTGCGACTCCCGGGGTGCTGTGGACAACAACTGCAGCCCAGCTGGCCAGTGCCGATGCCATGTGAATTTTACGGGGCACACCTGCAACCAATGTGCCCTGGGCTTCTACGGGTACCCCAGCTGCACAC
Seq A exon
CCTGCCAGTGCTCCAGGGAGGGCTCTCTGCACAGTACGTGTAACCAGGAGACGGGGCAGTGCAGCTGCCGGCCCAAAGTGACAGGGCTGCGCTGTGACAGCTGCGTGCCGGGTGCCTATGGATTTCCACACTGTGAAG
Seq C2 exon
TGGGCTCCTGTAACCCAGCTGGGTTAGTGACTGCAGATCCCTCGCTGGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
C2:
PF0005319=Laminin_EGF=PD(6.1=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTCCTGCGACTCCC
R:
GGGCCAGCGAGGGATCTG
Band lengths:
186-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]