RnoEX0049226 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175574549-175575515:-
Coord C1 exon
chr3:175575381-175575515
Coord A exon
chr3:175575149-175575286
Coord C2 exon
chr3:175574549-175574601
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTCCTATCCCCACCCCCAGCTT
3' ss Score
7.32
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGTGCCTGTGACCCTCGGGGGTCCCTGGATCAACAGTGTGGAGCGGGTGGTTTGTGCCACTGCCGTCCTGGCTACACGGGCGCCACTTGTCAGGAATGTAGCCCCGGATTCTACGGCTTTCCCAGCTGCATCC
Seq A exon
CTTGCCACTGCTCTGCCGATGGCTCCATGCATACAACCTGTGACCCTACAACTGGCCAGTGTAGGTGCCGTCCCCGAGTGACAGGACTTCGTTGTGATATGTGTGTGCCGGGGGCCTATAACTTCCCCTACTGCGAAG
Seq C2 exon
CTGGCTCTTGTCATCCTGCTGGTCTGGCCCCAGCCAATCCTGCCCTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
C2:
PF0005319=Laminin_EGF=PD(6.1=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGCCTGTGACCCTCG
R:
CTCAGGAAGGGCAGGATTGG
Band lengths:
188-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]