GgaEX1032835 @ galGal4
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8210717-8212744:-
Coord C1 exon
chr20:8212610-8212744
Coord A exon
chr20:8210945-8211082
Coord C2 exon
chr20:8210717-8210769
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCCTCTTTTGCAGCCT
3' ss Score
11.16
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
CTTGCTCCTGCGACTCCCGGGGTGCTGTGGACAACAACTGCAGCCCAGCTGGCCAGTGCCGATGCCATGTGAATTTTACGGGGCACACCTGCAACCAATGTGCCCTGGGCTTCTACGGGTACCCCAGCTGCACAC
Seq A exon
CCTGCCAGTGCTCCAGGGAGGGCTCTCTGCACAGTACGTGTAACCAGGAGACGGGGCAGTGCAGCTGCCGGCCCAAAGTGACAGGGCTGCGCTGTGACAGCTGCGTGCCGGGTGCCTATGGATTTCCACACTGTGAAG
Seq C2 exon
TGGGCTCCTGTAACCCAGCTGGGTTAGTGACTGCAGATCCCTCGCTGGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'14-19,'14-17,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
C2:
PF0005319=Laminin_EGF=PD(6.1=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTCCTGCGACTCCC
R:
GGGCCAGCGAGGGATCTG
Band lengths:
186-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]