GgaEX1033602 @ galGal4
Exon Skipping
Gene
ENSGALG00000003424 | LMX1A
Description
LIM homeobox transcription factor 1-alpha [Source:RefSeq peptide;Acc:NP_001244317]
Coordinates
chr8:5142516-5163442:+
Coord C1 exon
chr8:5142516-5142702
Coord A exon
chr8:5160764-5160996
Coord C2 exon
chr8:5163273-5163442
Length
233 bp
Sequences
Splice sites
3' ss Seq
GTCTCACCTTGCTCCTGCAGGTT
3' ss Score
11.17
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCAGAGCCGCGACGCCCCGCTCCGTGTGTGAGGGGTGCCAGCGGGTCATCGCCGACCGCTTCCTCCTGCGCCTCAACGACAGCCTGTGGCACGAGCGCTGCGTGCAGTGCACGTCGTGCAAGGAGCCCCTGCACACCACCTGCTTCTACCGAGACAAGAAGCTCTACTGCAAGCTGGACTACGAGAA
Seq A exon
GTTGTTCGCAGTGAAGTGCGCCGGGTGCCTGGAGAGCATCGCGCCCAGCGAGCTGGTGATGCGCGCCCAGCAGAGCGTCTACCACCTGCACTGCTTCTGCTGCTGCGTCTGCGAGCGGCGCCTGCAGAAGGGCGACGAGTTCGTGCTGAAGGAAGGGCAGCTGCTCTGTAAGGGCGACTACGAGAAGGAGCGTGAGCTGCTGAGCTTGGTGAGCCCGGCTCTGTCGGATTCCG
Seq C2 exon
GTAAAAGTGACGATGAAGACAGTGTCTGCAAAATGGGCCCAGCCTCAGCGAAGGGAGCTGAGGAGGGGAAGGACCACAAGCGGCCCAAGCGCCCGCGCACCATCCTGACCACGCAACAGCGCAGGGCCTTCAAGGCGTCCTTCGAGGTCTCCTCCAAGCCCTGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424-'1-5,'1-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.6=84.1)
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCTGCGCCTCAAC
R:
CTGCAGGGCTTGGAGGAGA
Band lengths:
295-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]