MmuEX6029023 @ mm10
Exon Skipping
Gene
ENSMUSG00000026686 | Lmx1a
Description
LIM homeobox transcription factor 1 alpha [Source:MGI Symbol;Acc:MGI:1888519]
Coordinates
chr1:167709611-167824844:+
Coord C1 exon
chr1:167709611-167709711
Coord A exon
chr1:167791337-167791569
Coord C2 exon
chr1:167824744-167824844
Length
233 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCCCTCTTGTAGACT
3' ss Score
12.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACATAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Seq A exon
ACTGTTTGCTGTCAAATGTGGGGGCTGCTTCGAGGCCATTGCGCCCAATGAGTTTGTCATGCGTGCCCAGAAGAGCGTATACCACCTGAGCTGCTTCTGCTGCTGCGTCTGTGAGCGACAGCTGCAGAAGGGTGACGAGTTTGTCCTGAAGGAGGGCCAGCTGCTCTGCAAAGGGGACTATGAGAAAGAACGGGAGCTGCTGAGCCTGGTGAGCCCTGCGGCCTCAGACTCAG
Seq C2 exon
CACCTCAGCAGGTCTTGGCTCTTTTCCTGGAGGATTGACCCATACCTTCATTCCTGATGGATCTGCGTTCTTTGTCATCCTGCTTGGATTAGGCTGTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026686-'7-6,'7-5,8-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGGTCTACAAAGTGAGT
R:
ACAACAGCCTAATCCAAGCAGG
Band lengths:
201-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types